Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs28690417 chr2:232064182 G/A 9.86E-9 480 32.42 26.88 26.72 KM Plot
PRAD rs2869067 chr17:62991653 A/G 1.04E-8 481 30.87 31.62 19.63 KM Plot
PRAD rs2869072 chr17:62991867 A/G 1.04E-8 481 30.87 31.62 19.63 KM Plot
PRAD rs28712751 chr7:135129586 T/C 2.02E-9 492 30.77 32.4 3.03 KM Plot
PRAD rs28722935 chr16:84230878 G/A 2.56E-7 478 31.12 31.58 22.93 KM Plot
PRAD rs28735117 chr15:67933892 C/T 5.13E-5 489 33.37 27.57 28.8 KM Plot
PRAD rs2874631 chr4:165647041 T/C 5.68E-5 492 30.77 32.9 44.32 KM Plot
PRAD rs28782525 chr1:93708745 T/C 3.62E-6 494 31.3 28.13 18.97 KM Plot
PRAD rs2880131 chr2:239089151 A/C 1.93E-8 494 31.37 28.97 31.13 KM Plot
PRAD rs28810156 chr5:178973927 C/G 0.000158 478 24.38 35.93 30.8 KM Plot
PRAD rs28856080 chr11:1631300 T/G 0.000116 494 18.55 31 31.23 KM Plot
PRAD rs28858823 chr4:7891544 C/A 9.97E-5 484 30.3 33.37 17.4 KM Plot
PRAD rs2893242 chr1:93705532 C/T 3.71E-6 493 31.33 26.8 18.97 KM Plot
PRAD rs2902745 chr19:56093748 G/T 2.95E-5 473 31.43 27.4 22.37 KM Plot
PRAD rs2934958 chr17:37812517 T/C 5.4E-6 493 30.8 33.05 28.63 KM Plot